[ase-users] testase fails at trajectory.py

[Marcin Dulak]

Hi,

Misha Monder wrote:
> Hello there,
>
> Not sure if I've already reported this but trajectory.py fails in the testase suite. Attaching log file below. The first part of the log file is the error I got when I tried to display a .traj file generated by GPAW.
>
> This is for ASE 3.2.0.1121 on Mac OSX 10.5.8 with the current version of Fink (Sept 4, 2009)
>
> ---------------------------------------
> Traceback (most recent call last):
>   File "/Users/mishamonder/ase/tools/ag", line 113, in <module>
>     run(opt, args)
>   File "/Users/mishamonder/ase/tools/ag", line 108, in run
>     gui.run(opt.graph)
>   File "/Users/mishamonder/ase/ase/gui/gui.py", line 249, in run
>     self.plot_graphs(expr=expr)
>   File "/Users/mishamonder/ase/ase/gui/gui.py", line 339, in plot_graphs
>     g.plot(expr=expr)
>   File "/Users/mishamonder/ase/ase/gui/graphs.py", line 65, in plot
>     self.gui.graphs.append(pylab.figure(figsize=(x * 2.5**0.5, x)))
>   File "/sw/lib/python2.5/site-packages/matplotlib/pyplot.py", line 254, in figure
>     **kwargs)
>   File "/sw/lib/python2.5/site-packages/matplotlib/backends/backend_gtk.py", line 85, in new_figure_manager
>     manager = FigureManagerGTK(canvas, num)
>   File "/sw/lib/python2.5/site-packages/matplotlib/backends/backend_gtk.py", line 443, in __init__
>     self.window.set_icon_from_file(window_icon)
> GError: Couldn't recognize the image file format for file '/sw/lib/python2.5/site-packages/matplotlib/mpl-data/images/matplotlib.svg'
>
>   
i can see a discussion about the issue, they mention installing 
additional packages:
http://www.mail-archive.com/matplotlib-users@lists.sourceforge.net/msg13305.html
https://bugzilla.redhat.com/show_bug.cgi?id=435702

Best regards,

Marcin

> An exception occurred!  Please report the issue to
> ase-developers at listserv.fysik.dtu.dk - thanks!  Please also report this if
> it was a user error, so that a better error message can be provided
> next time.
> Ag-Cu100.py (ScriptTestCase) ... ok
> COCu111_2.py (ScriptTestCase) ... ok
> asap.py (ScriptTestCase) ... ok
> atom.py (ScriptTestCase) ... ok
> bader.py (ScriptTestCase) ... ok
> build.py (ScriptTestCase) ... ok
> coverage.py (ScriptTestCase) ... ok
> dimer.py (ScriptTestCase) ... ok
> distmom.py (ScriptTestCase) ... ok
> emt.py (ScriptTestCase) ... ok
> emt1.py (ScriptTestCase) ... ok
> example.py (ScriptTestCase) ... ok
> h2.py (ScriptTestCase) ... ok
> io.py (ScriptTestCase) ... ok
> jacapo.py (ScriptTestCase) ... ok
> magmom.py (ScriptTestCase) ... ok
> maxwellboltzmann.py (ScriptTestCase) ... ok
> md.py (ScriptTestCase) ... ok
> n2.py (ScriptTestCase) ... ok
> neb.py (ScriptTestCase) ... ok
> neighbor.py (ScriptTestCase) ... ok
> netcdf.py (ScriptTestCase) ... ok
> properties.py (ScriptTestCase) ... ok
> pull.py (ScriptTestCase) ... ok
> replay.py (ScriptTestCase) ... ok
> rotate.py (ScriptTestCase) ... ok
> rotate_euler.py (ScriptTestCase) ... ok
> stm.py (ScriptTestCase) ... ok
> strain.py (ScriptTestCase) ... ok
> things.py (ScriptTestCase) ... ok
> trajectory.py (ScriptTestCase) ... ERROR
> unitcellfilter.py (ScriptTestCase) ... ok
> vacancy.py (ScriptTestCase) ... ok
> verlet.py (ScriptTestCase) ... ok
> vib.py (ScriptTestCase) ... ok
> vtk_data.py (ScriptTestCase) ... ok
> vtk_pipeline.py (ScriptTestCase) ... ok
> COCu111.py (ScriptTestCase) ... ok
>
> ======================================================================
> ERROR: trajectory.py (ScriptTestCase)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/Users/mishamonder/ase/ase/test/__init__.py", line 45, in testfile
>     execfile(self.filename, {'display': self.display})
>   File "/Users/mishamonder/ase/ase/test/trajectory.py", line 11, in <module>
>     traj = PickleTrajectory('1.traj', 'a')
>   File "/Users/mishamonder/ase/ase/io/trajectory.py", line 61, in __init__
>     self.open(filename, mode)
>   File "/Users/mishamonder/ase/ase/io/trajectory.py", line 79, in open
>     self.read_header()
>   File "/Users/mishamonder/ase/ase/io/trajectory.py", line 103, in read_header
>     raise IOError('This is not a trajectory file!')
> IOError: This is not a trajectory file!
>
> ----------------------------------------------------------------------
> Ran 38 tests in 94.840s
>
> FAILED (errors=1)
>  ------------------------------------
>
>
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>   

-- 
***********************************
 
Marcin Dulak
Technical University of Denmark
Department of Physics
Building 307, Room 229
DK-2800 Kongens Lyngby
Denmark
Tel.: (+45) 4525 3157
Fax.: (+45) 4593 2399
email: Marcin.Dulak at fysik.dtu.dk

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