[ase-users] neb documentation hard to understand

Markus Kaukonen markus.kaukonen at iki.fi
Mon Dec 5 09:15:41 CET 2016


Dear All,

I'm trying to understand the traj file in connection with neb calculations.

In
https://wiki.fysik.dtu.dk/ase/ase/neb.html#the-neb-class

there are lines:

"""

For the example above, you can write the images to individual trajectory
files like this:

for i in range(1, 4):
    qn.attach(io.Trajectory('A2B-%d.traj' % i, 'w', images[i]))

"""

but I cannot find anything related to 'qn'


Another thing:
How does one get the energy related to a traj structure file?
Is the easiest way:
"""
atoms = read('A.traj')
print(atoms.get_calculator().get_potential_energy(image))
"""

Terveisin, Markus

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