[ase-users] ASE-test error

[Steen Lysgaard]

Hi Yanhui,

I can't reproduce this error. Have you tried with the latest development 
version of ASE on gitlab?
Get it by:
git clone https://gitlab.com/ase/ase.git

Best regards,
Steen

On 2016-01-21 08:24, Dr. ZHANG Yanhui wrote:
>
> /Dear ASE community,
> /
>
> I am trying to install the ASE Version: 3.10.0 using python 2.7.5 GCC 
> 4.8.5 /(Red Hat 4.8.5-4) 64bit ELF on Linux x86_64 /. /
> /
>
> /I have I followed the steps from installation guide from /website 
> https://wiki.fysik.dtu.dk/ase/download.html. 
> <https://wiki.fysik.dtu.dk/ase/download.html.>
>
> However, error comes out (testase.log attached):
>
> /====================================================================== ERROR: 
> ga/mutations.py (ScriptTestCase) 
> ---------------------------------------------------------------------- 
> Traceback (most recent call last):   File 
> "/usr/lib/python2.7/site-packages/ase/test/__init__.py", line 51, in 
> testfile     {'display': self.display})   File 
> "/usr/lib/python2.7/site-packages/ase/test/ga/mutations.py", line 60, 
> in <module>     c3, desc = mmut.get_new_individual([c1])   File 
> "/usr/lib/python2.7/site-packages/ase/ga/standardmutations.py", line 
> 92, in get_new_individual     indi = self.mutate(f)   File 
> "/usr/lib/python2.7/site-packages/ase/ga/standardmutations.py", line 
> 120, in mutate     a.set_positions(p_tot)   File 
> "/usr/lib/python2.7/site-packages/ase/atoms.py", line 608, in 
> set_positions     constraint.adjust_positions(self, newpositions)   
> File "/usr/lib/python2.7/site-packages/ase/constraints.py", line 122, 
> in adjust_positions     new[self.index] = atoms.positions[self.index] 
> VisibleDeprecationWarning: boolean index did not match indexed array 
> along dimension 0; dimension is 36 but corresponding boolean dimension 
> is 32 
> ---------------------------------------------------------------------- 
> Ran 141 tests in 83.540s FAILED (errors=2)
> /======================================================================/
> /Please help. Thanks in advance. Regards, Yanhui //
> <https://wiki.fysik.dtu.dk/ase/download.html.>
> 	
> Installation guide — ASE documentation 
> <https://wiki.fysik.dtu.dk/ase/download.html.>
> wiki.fysik.dtu.dk
> Installation guide¶ In order to choose the right method for installing 
> ASE identify your computer system and your goals related to ASE. Is it 
> a personal laptop or ...
>
> ///After installation when I tried to test installation using the 
> command////"python -c "from ase.test import test; test(verbosity=2, 
> display=True)" //2>&1 | tee testase.log" //it failed with 
> error............../
>
>
>
>
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-- 
Steen Lysgaard
Post doc
Department of Energy Conversion and Storage
Technical University of Denmark
-------------------------------------------
Frederiksborgvej 399, P.O. Box 49
4000 Roskilde
Mobile +45 5194 4886
stly at dtu.dk
http://www.dtu.dk

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