[ase-users] ase installation on centos 7.0, where id i miss?

[Zongtang Fang]

Hi, Ask,

Thanks I could install with pip.

when I did ase test, got some kind error message,  is this acceptable for
use ?

Thanks.

Zongtang




ase test



======================================================================

ERROR: fio/compression.py

----------------------------------------------------------------------

Traceback (most recent call last):

  File "/home/zfang/.local/lib/python2.7/site-packages/ase/test/__init__.py",
line 50, in testfile

    exec(compile(fd.read(), self.filename, 'exec'), {})

  File "/home/zfang/.local/lib/python2.7/site-packages/ase/test/fio/compression.py",
line 111, in <module>

    test_compression_write_single('xz')

  File "/home/zfang/.local/lib/python2.7/site-packages/ase/test/fio/compression.py",
line 33, in test_compression_write_single

    io.write(filename, single)

  File "/home/zfang/.local/lib/python2.7/site-packages/ase/io/formats.py",
line 352, in write

    _write(filename, fd, format, io, images, parallel=parallel, **kwargs)

  File "/home/zfang/.local/lib/python2.7/site-packages/ase/io/formats.py",
line 380, in _write

    fd = open_with_compression(filename, 'w')

  File "/home/zfang/.local/lib/python2.7/site-packages/ase/io/formats.py",
line 303, in open_with_compression

    fd = lzma.open(filename, mode)

AttributeError: 'module' object has no attribute 'open'



----------------------------------------------------------------------

Ran 220 tests in 169.402s


FAILED (errors=1, skipped=61)




On Thu, Nov 30, 2017 at 5:08 PM, Zongtang Fang <zfang at crimson.ua.edu> wrote:

> Hi, Ask,
>
> The version I installed is 3.13.0.
>
> is there a way to fix that except for using pip ?
>
> Thanks.
>
> Zongtang
>
>
>
> On Thu, Nov 30, 2017 at 4:39 PM, Ask Hjorth Larsen <asklarsen at gmail.com>
> wrote:
>
>> Hi Zongtang,
>>
>>
>> 2017-11-30 22:00 GMT+01:00 Zongtang Fang via ase-users
>> <ase-users at listserv.fysik.dtu.dk>:
>> > Centos7.0
>> >
>> > Python 2.7
>> >
>> > $ sudo yum install epel-release
>> >
>> > $sudo yum install -y python-ase
>> >
>> > $ export PYTHONPATH=/usr/lib/python2.7/site-packages/ase:$PYTHONPATH
>> > $ export PATH=/usr/bin:$PATH
>> >
>> > $ ase test
>> >
>> > ase : command not found
>> >
>> > where did I miss ?
>> >
>> > Does the command should be in the folder of ~/ase/bin?
>> >
>> > I did not see the bin folder in ~/ase ?
>>
>> You may wish to install using pip rather than the repositories (yum).
>>
>> I don't know which version they have.  Maybe it is from before the
>> 'ase' command.
>>
>> Best regards
>> Ask
>>
>> >
>> > Thanks
>> >
>> > Zongtang
>> >
>> >
>> >
>> > _______________________________________________
>> > ase-users mailing list
>> > ase-users at listserv.fysik.dtu.dk
>> > https://listserv.fysik.dtu.dk/mailman/listinfo/ase-users
>>
>
>
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