[ase-users] test fail

[Gaël Donval]

> Hello,
> 
> I had ASE working 1.5 months ago and then I ran ase.test file again
> and got
> the following error messages.  (see below).    Can anyone help?
> 
> Panus-MacBook-Air:site-packages Panu$ python -m ase.test
> 
> Traceback (most recent call last):
> 
>   File
> "/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions
> /2.7/lib/python2.7/runpy.py",
> line 163, in _run_module_as_main
> 
>     mod_name, _Error)
> 
>   File
> "/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions
> /2.7/lib/python2.7/runpy.py",
> line 102, in _get_module_details
> 
>     loader = get_loader(mod_name)
> 
>   File
> "/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions
> /2.7/lib/python2.7/pkgutil.py",
> line 464, in get_loader
> 
>     return find_loader(fullname)
> 
>   File
> "/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions
> /2.7/lib/python2.7/pkgutil.py",
> line 474, in find_loader
> 
>     for importer in iter_importers(fullname):
> 
>   File
> "/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions
> /2.7/lib/python2.7/pkgutil.py",
> line 430, in iter_importers
> 
>     __import__(pkg)
> 
>   File "ase/__init__.py", line 8, in <module>
> 
>     import numpy as np
> 
>   File "numpy/__init__.py", line 142, in <module>
> 
>     from . import add_newdocs
> 
>   File "numpy/add_newdocs.py", line 13, in <module>
> 
>     from numpy.lib import add_newdoc
> 
>   File "numpy/lib/__init__.py", line 8, in <module>
> 
>     from .type_check import *
> 
>   File "numpy/lib/type_check.py", line 11, in <module>
> 
>     import numpy.core.numeric as _nx
> 
>   File "numpy/core/__init__.py", line 36, in <module>
> 
>     from . import numeric
> 
>   File "numpy/core/numeric.py", line 3, in <module>
> 
>     import collections
> 
>   File
> "/Users/Panu/.local/lib/python2.7/site-
> packages/ase/collections/__init__.py",
> line 1, in <module>
> 
>     from ase.collections.collection import Collection
> 
>   File "ase/collections/__init__.py", line 1, in <module>
> 
>     from ase.collections.collection import Collection
> 
>   File "ase/collections/collection.py", line 3, in <module>
> 
>     from ase.db.row import AtomsRow
> 
>   File "ase/db/__init__.py", line 1, in <module>
> 
>     from ase.db.core import connect
> 
>   File "ase/db/core.py", line 8, in <module>
> 
>     from ase.atoms import Atoms, symbols2numbers
> 
>   File "ase/atoms.py", line 18, in <module>
> 
>     from ase.atom import Atom
> 
>   File "ase/atom.py", line 5, in <module>
> 
>     from ase.data import atomic_numbers, chemical_symbols,
> atomic_masses
> 
>   File "ase/data/__init__.py", line 3, in <module>
> 
>     from ase.data.vdw import vdw_radii
> 
>   File "ase/data/vdw.py", line 30, in <module>
> 
>     vdw_radii = np.array([
> 
> AttributeError: 'module' object has no attribute 'array'

The import in ase/data/vdw.py is straight-forward, so I guess the
problem lies with numpy.

Could you open a terminal and type:

$ python2
>>> import numpy as np
>>> np.array([])

If that fails, you have a problem with numpy (which may be solved by
reinstalling it).

Gaël

> 
> 
> Thanks,
> 
> Panu
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