[ase-users] testing ase
José C. Conesa
jcconesa at icp.csic.es
Fri Aug 17 22:27:24 CEST 2018
Hi,
Attached is the result of command
ase test Ag-Cu100.py CO2_Au111.py COCu111.py COCu111_2.py
I hope this helps better.
Thanks in advance,
JC Conesa
El 17/08/2018 a las 19:16, Ask Hjorth Larsen escribió:
> Hi,
>
>
>
> Den fre. 17. aug. 2018 kl. 02.29 skrev José C. Conesa <jcconesa at icp.csic.es>:
>> Hi,
>>
>> In the attached file is the result of ase test -v
> Sorry, I should have asked for:
>
> ase test Ag-Cu100.py CO2_Au111.py COCu111.py COCu111_2.py
>
> or something similar. This should make sure that you get to see the
> stack traces for those errors instead of the test suite waiting
> forever and hence never printing them.
>
> Best regards
> Ask
>
>
>> Hopefully this helps
>>
>>
>> El 17/08/2018 a las 0:51, Ask Hjorth Larsen escribió:
>>
>> Hi,
>>
>> El jue., 16 ago. 2018 12:20, José C. Conesa via ase-users <ase-users at listserv.fysik.dtu.dk> escribió:
>>> Hi,
>>>
>>> I have just downloaded ase-3.6.12 and installed it in a Linux mainframe which already had installed python 2.7, scipy, numpy and matplotlib. I added the proper definitions to $PYTHONPATH and $PATH. When I type ase test I get the following result:
>>>
>>> platform Linux-3.10.0-514.el7.x86_64-x86_64-with-redhat-7.3-Maipo
>>> python-2.7.5 /usr/bin/python
>>> ase-3.16.2 /home/icp/jcconesa/ase/ase/
>>> numpy-1.7.1 /usr/lib64/python2.7/site-packages/numpy/
>>> scipy-0.12.1 /usr/lib64/python2.7/site-packages/scipy/
>>> test-dir /tmp/ase-test-4ge6yM
>>>
>>> EEEE...E...E...E........E..sE.E..EE....E.E.E.E.....Ess.E.E.E....E.Es.EE.E..s....EEE.E.E.....sE.E.............EE..s.ssss....Es......sssssssssssss.E.s..ss....ssssss..ss..s....E.E.ssEE....EEE.E
>>>
>>> and the command seems to remain stuck; it has been running for more than 25 min already. ls -l /tmp/ase-test-4ge6yM shows that all its content was generated in the first minute, no further change is revealed.
>>>
>>> Is there some failure?
>> Yes, this is not supposed to happen. Please rerun with -v to get more info.
>>
>> Best regards
>> Ask
>>
>>
>>
>>> Thanks,
>>>
>>>
>>> José C. Conesa
>>> Instituto de Catálisis y Petroleoquímica, CSIC
>>> Marie Curie 2, Cantoblanco
>>> 28049 Madrid, Spain
>>> Tel. (+34)915854766
>>>
>>>
>>> Libre de virus. www.avast.com
>>> _______________________________________________
>>> ase-users mailing list
>>> ase-users at listserv.fysik.dtu.dk
>>> https://listserv.fysik.dtu.dk/mailman/listinfo/ase-users
>>
>> --
>> José C. Conesa
>> Instituto de Catálisis y Petroleoquímica, CSIC
>> Marie Curie 2, Cantoblanco
>> 28049 Madrid, Spain
>> Tel. (+34)915854766
--
José C. Conesa
Instituto de Catálisis y Petroleoquímica, CSIC
Marie Curie 2, Cantoblanco
28049 Madrid, Spain
Tel. (+34)915854766
---
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platform Linux-3.10.0-514.el7.x86_64-x86_64-with-redhat-7.3-Maipo
python-2.7.5 /usr/bin/python
ase-3.16.2 /home/icp/jcconesa/ase/ase/
numpy-1.7.1 /usr/lib64/python2.7/site-packages/numpy/
scipy-0.12.1 /usr/lib64/python2.7/site-packages/scipy/
test-dir /tmp/ase-test-5y5Boo
EEEE
======================================================================
ERROR: Ag-Cu100.py
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/icp/jcconesa/ase/ase/test/__init__.py", line 50, in testfile
exec(compile(fd.read(), self.filename, 'exec'), {})
File "/home/icp/jcconesa/ase/ase/test/Ag-Cu100.py", line 54, in <module>
dyn.run(fmax=0.05)
File "/home/icp/jcconesa/ase/ase/optimize/optimize.py", line 176, in run
self.call_observers()
File "/home/icp/jcconesa/ase/ase/optimize/optimize.py", line 108, in call_observers
function(*args, **kwargs)
File "/home/icp/jcconesa/ase/ase/io/trajectory.py", line 129, in write
self._write_atoms(image, **kwargs)
File "/home/icp/jcconesa/ase/ase/io/trajectory.py", line 201, in _write_atoms
b.sync()
File "/home/icp/jcconesa/ase/ase/io/ulm.py", line 251, in sync
writeint(self.fd, len(s))
File "/home/icp/jcconesa/ase/ase/io/ulm.py", line 105, in writeint
fd.write(a.tobytes())
AttributeError: 'numpy.ndarray' object has no attribute 'tobytes'
======================================================================
ERROR: CO2_Au111.py
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/icp/jcconesa/ase/ase/test/__init__.py", line 50, in testfile
exec(compile(fd.read(), self.filename, 'exec'), {})
File "/home/icp/jcconesa/ase/ase/test/CO2_Au111.py", line 31, in <module>
dyn.run(fmax=0.05)
File "/home/icp/jcconesa/ase/ase/optimize/optimize.py", line 176, in run
self.call_observers()
File "/home/icp/jcconesa/ase/ase/optimize/optimize.py", line 108, in call_observers
function(*args, **kwargs)
File "/home/icp/jcconesa/ase/ase/io/trajectory.py", line 129, in write
self._write_atoms(image, **kwargs)
File "/home/icp/jcconesa/ase/ase/io/trajectory.py", line 201, in _write_atoms
b.sync()
File "/home/icp/jcconesa/ase/ase/io/ulm.py", line 251, in sync
writeint(self.fd, len(s))
File "/home/icp/jcconesa/ase/ase/io/ulm.py", line 105, in writeint
fd.write(a.tobytes())
AttributeError: 'numpy.ndarray' object has no attribute 'tobytes'
======================================================================
ERROR: COCu111.py
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/icp/jcconesa/ase/ase/test/__init__.py", line 50, in testfile
exec(compile(fd.read(), self.filename, 'exec'), {})
File "/home/icp/jcconesa/ase/ase/test/COCu111.py", line 65, in <module>
dyn.run(fmax=0.05)
File "/home/icp/jcconesa/ase/ase/optimize/optimize.py", line 176, in run
self.call_observers()
File "/home/icp/jcconesa/ase/ase/optimize/optimize.py", line 108, in call_observers
function(*args, **kwargs)
File "/home/icp/jcconesa/ase/ase/io/trajectory.py", line 129, in write
self._write_atoms(image, **kwargs)
File "/home/icp/jcconesa/ase/ase/io/trajectory.py", line 201, in _write_atoms
b.sync()
File "/home/icp/jcconesa/ase/ase/io/ulm.py", line 251, in sync
writeint(self.fd, len(s))
File "/home/icp/jcconesa/ase/ase/io/ulm.py", line 105, in writeint
fd.write(a.tobytes())
AttributeError: 'numpy.ndarray' object has no attribute 'tobytes'
======================================================================
ERROR: COCu111_2.py
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/icp/jcconesa/ase/ase/test/__init__.py", line 50, in testfile
exec(compile(fd.read(), self.filename, 'exec'), {})
File "/home/icp/jcconesa/ase/ase/test/COCu111_2.py", line 64, in <module>
dyn.run(fmax=0.1)
File "/home/icp/jcconesa/ase/ase/optimize/optimize.py", line 176, in run
self.call_observers()
File "/home/icp/jcconesa/ase/ase/optimize/optimize.py", line 108, in call_observers
function(*args, **kwargs)
File "/home/icp/jcconesa/ase/ase/io/trajectory.py", line 129, in write
self._write_atoms(image, **kwargs)
File "/home/icp/jcconesa/ase/ase/io/trajectory.py", line 201, in _write_atoms
b.sync()
File "/home/icp/jcconesa/ase/ase/io/ulm.py", line 251, in sync
writeint(self.fd, len(s))
File "/home/icp/jcconesa/ase/ase/io/ulm.py", line 105, in writeint
fd.write(a.tobytes())
AttributeError: 'numpy.ndarray' object has no attribute 'tobytes'
----------------------------------------------------------------------
Ran 4 tests in 3.723s
FAILED (errors=4)
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