[ase-users] There is one error while running the command ase test

[Anant Ojha]

Dear authority,

The test somehow succeeded but there is a message that I could not
understand. If you could help me with that.


platform        Linux-4.4.0-104-generic-x86_64-with-Ubuntu-16.04-xenial
python-2.7.12   /usr/bin/python
ase-3.15.1b1    /usr/local/lib/python2.7/dist-packages/ase/
numpy-1.13.3    /usr/local/lib/python2.7/dist-packages/numpy/
scipy-1.0.0     /home/anandojha002/.local/lib/python2.7/site-packages/scipy/
test-dir        /tmp/ase-test-Ah_NyM

...........................s........................ss............s......sNo
handlers could be found for logger "ase.optimize.precon"
................s..................s.s.ssss.....s.....ssssssssss......ss....ssssss..ss..s.......ss.............s............sssss..s.sssssss.sss..ssssssssssssss
----------------------------------------------------------------------
Ran 234 tests in 122.587s

OK (skipped=67)


On Wed, Jan 17, 2018 at 12:39 PM, Anant Ojha <anandojha002 at gmail.com> wrote:

> Dear authority,
>
>
> I have just installed ASE and there is one error while running the command
> ase test. Please help me. I have sent you the entire command and the error.
>
>
> anandojha002 at anand:~$ ase test
> platform        Linux-4.4.0-104-generic-x86_64-with-Ubuntu-16.04-xenial
> python-2.7.12   /usr/bin/python
> ase-3.15.0      /home/anandojha002/ase/ase/
> numpy-1.14.0    /home/anandojha002/.local/lib/
> python2.7/site-packages/numpy/
> scipy-1.0.0     /home/anandojha002/.local/lib/
> python2.7/site-packages/scipy/
> test-dir        /tmp/ase-test-QzS1J1
>
> ...........................s.....E.................ss.......
> .....s......s..............s..................s.sss.....s...
> ..ssssssssss......s....ssssss..ss..s/home/anandojha002/ase/ase/io/dmol.py:78:
> FutureWarning: `rcond` parameter will change to the default of machine
> precision times ``max(M, N)`` where M and N are the input matrix dimensions.
> To use the future default and silence this warning we advise to pass
> `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
>   lstsq_fit = np.linalg.lstsq(atoms.cell, new_cell)
> /home/anandojha002/ase/ase/calculators/dmol.py:528: FutureWarning:
> `rcond` parameter will change to the default of machine precision times
> ``max(M, N)`` where M and N are the input matrix dimensions.
> To use the future default and silence this warning we advise to pass
> `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
>   lstsq_fit = np.linalg.lstsq(A, B)
> /home/anandojha002/ase/ase/io/dmol.py:226: FutureWarning: `rcond`
> parameter will change to the default of machine precision times ``max(M,
> N)`` where M and N are the input matrix dimensions.
> To use the future default and silence this warning we advise to pass
> `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
>   lstsq_fit = np.linalg.lstsq(atoms.cell, new_cell)
> ......ss............s............sssss..s.ssss.ssssssssssssssss
> ======================================================================
> ERROR: doctests.py
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/home/anandojha002/ase/ase/test/__init__.py", line 50, in testfile
>     exec(compile(fd.read(), self.filename, 'exec'), {})
>   File "/home/anandojha002/ase/ase/test/doctests.py", line 26, in <module>
>     print(mod, doctest.testmod(mod, raise_on_error=True))
>   File "/usr/lib/python2.7/doctest.py", line 1911, in testmod
>     runner.run(test)
>   File "/usr/lib/python2.7/doctest.py", line 1799, in run
>     r = DocTestRunner.run(self, test, compileflags, out, False)
>   File "/usr/lib/python2.7/doctest.py", line 1454, in run
>     return self.__run(test, compileflags, out)
>   File "/usr/lib/python2.7/doctest.py", line 1363, in __run
>     self.report_failure(out, test, example, got)
>   File "/usr/lib/python2.7/doctest.py", line 1808, in report_failure
>     raise DocTestFailure(test, example, got)
> DocTestFailure: <DocTest ase.spacegroup.spacegroup.Spacegroup from
> /home/anandojha002/ase/ase/spacegroup/spacegroup.py:49 (6 examples)>
>
> ----------------------------------------------------------------------
> Ran 219 tests in 99.196s
>
> FAILED (errors=1, skipped=60)
>
> --
> WIth regards,
>
>
> *A. Anand Ojha, *
> *ETH-Zurich.*
>



-- 
WIth regards,


*A. Anand Ojha, *
*ETH-Zurich.*
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