[ase-users] FHI-aims cartesian rather than fractional position
Dong gi Kang
kdg4206 at gmail.com
Thu Dec 17 12:47:45 CET 2020
Hello ase users,
I practiced ase-aims with the example : https://wiki.fysik.dtu.dk/ase/ase/calculators/FHI-aims.html?highlight=aims#example (optimise H2O).
(the practice generate cartesian coordinate geometry inputfile)
Then, I moved on to (ZnO)1 to optimise with ase-aims as an practice with the script (below). However, it rather produces fractional coordinate geometry input file than cartesian coordinate.
How to stop it to make fractional coordinate geometry file?
n1 = Atoms([Atom('Zn',(0.559308, -0.335160, 0.414787)),
Atom('O', (1.722647, -0.652759, -0.723487))])
calc = Aims(run_command = "mpiexec -np 5 /home/{user ID}/software/fhi-aims/bin/aims.181008.mpi.x > aims.out",
xc='pbesol',
spin='none',
relativistic= ('atomic_zora', 'scalar'),
#charge= '0.0',
occupation_type= ('gaussian', '0.01'),
mixer= 'pulay',
n_max_pulay= '10',
charge_mix_param= '0.5',
sc_accuracy_rho= '1E-4',
sc_accuracy_eev= '1E-3',
sc_accuracy_etot= '1E-5',
sc_accuracy_forces= '1E-7',
sc_iter_limit= '1500',
relax_geometry= 'bfgs 1.e-3')
n1.calc = calc
dynamics = QuasiNewton(n1, trajectory='square_water.traj')
dynamics.run(fmax=0.000001)
#n1.get_positions()
ZnO_n1_aims()
print("========= Done ==========")
Many thanks in advance,
DG Kang
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