[ase-users] EOFError: Ran out of input

[Jakob Schiøtz]

Hi,

It looks like one of the pickle files it tries to read is defective.  Perhaps a previous calculation crashed while it was writing a file, or you ran out of diskspace writing the file.

Best regards

Jakob

--
Jakob Schiøtz, professor, Ph.D.
Department of Physics
Technical University of Denmark
DK-2800 Kongens Lyngby, Denmark




> On 12 Feb 2022, at 00.16, Hasan Al-Mahayni via ase-users <ase-users at listserv.fysik.dtu.dk> wrote:
> 
> Also, here is my inputfile:
> 
> Hasan Al-Mahayni
> 
> 
> On Fri, Feb 11, 2022 at 6:15 PM Hasan Al-Mahayni <hasanalmahayni at gmail.com> wrote:
> Hello Everyone, 
> 
> I am getting the following error :
> 
> Traceback (most recent call last):
>   File "run.py", line 133, in <module>
>     vib.summary(log='vib.txt')
>   File "/home/hasan99/.local/lib/python3.7/site-packages/ase/vibrations/vibrations.py", line 400, in summary
>     hnu = self.get_energies(method, direction)
>   File "/home/hasan99/.local/lib/python3.7/site-packages/ase/vibrations/vibrations.py", line 364, in get_energies
>     self.read(method, direction, **kw)
>   File "/home/hasan99/.local/lib/python3.7/site-packages/ase/vibrations/vibrations.py", line 317, in read
>     fminus = load(name + '-.pckl', combined_data)
>   File "/home/hasan99/.local/lib/python3.7/site-packages/ase/vibrations/vibrations.py", line 293, in load
>     f = pickleload(fl)
> EOFError: Ran out of input
> 
> I have never seen this error before, and I have been running vibrational analysis (deltaG) for 1 month now and never got this error. My code runs fine and generates all the "vib." files until I get to "vib.summary(log='vib.txt')". I attached the python script as well as the submission file. Please let me know if you have any idea!
> 
> Thanks,
> 
> Hasan Al-Mahayni
> <input.xyz>_______________________________________________
> ase-users mailing list
> ase-users at listserv.fysik.dtu.dk
> https://listserv.fysik.dtu.dk/mailman/listinfo/ase-users