[ase-users] EOFError: Ran out of input

[Hasan Al-Mahayni]

Will do, thanks!

On Mon, Feb 14, 2022 at 4:20 AM Jakob Schiøtz <schiotz at fysik.dtu.dk> wrote:

> Hi Hassan
>
> Great that it works.  Please remember to answer on the mailing list too,
> so others who have a similar problem can see the solution.
>
> Best regards
>
> Jakob
>
> --
> Jakob Schiøtz, professor, Ph.D.
> Department of Physics
> Technical University of Denmark
> DK-2800 Kongens Lyngby, Denmark
>
>
>
>
> > On 13 Feb 2022, at 02.22, Hasan Al-Mahayni <hasanalmahayni at gmail.com>
> wrote:
> >
> > Hi,
> >
> > Thank you for your help. Indeed, there was one empty pickl file. I have
> deleted it and restarted the job, hopefully it works!
> >
> > Thank,
> > Hasan Al-Mahayni
> >
> >
> > On Sat, Feb 12, 2022 at 5:07 AM Jakob Schiøtz <schiotz at fysik.dtu.dk>
> wrote:
> > Hi,
> >
> > It looks like one of the pickle files it tries to read is defective.
> Perhaps a previous calculation crashed while it was writing a file, or you
> ran out of diskspace writing the file.
> >
> > Best regards
> >
> > Jakob
> >
> > --
> > Jakob Schiøtz, professor, Ph.D.
> > Department of Physics
> > Technical University of Denmark
> > DK-2800 Kongens Lyngby, Denmark
> >
> >
> >
> >
> > > On 12 Feb 2022, at 00.16, Hasan Al-Mahayni via ase-users <
> ase-users at listserv.fysik.dtu.dk> wrote:
> > >
> > > Also, here is my inputfile:
> > >
> > > Hasan Al-Mahayni
> > >
> > >
> > > On Fri, Feb 11, 2022 at 6:15 PM Hasan Al-Mahayni <
> hasanalmahayni at gmail.com> wrote:
> > > Hello Everyone,
> > >
> > > I am getting the following error :
> > >
> > > Traceback (most recent call last):
> > >   File "run.py", line 133, in <module>
> > >     vib.summary(log='vib.txt')
> > >   File
> "/home/hasan99/.local/lib/python3.7/site-packages/ase/vibrations/vibrations.py",
> line 400, in summary
> > >     hnu = self.get_energies(method, direction)
> > >   File
> "/home/hasan99/.local/lib/python3.7/site-packages/ase/vibrations/vibrations.py",
> line 364, in get_energies
> > >     self.read(method, direction, **kw)
> > >   File
> "/home/hasan99/.local/lib/python3.7/site-packages/ase/vibrations/vibrations.py",
> line 317, in read
> > >     fminus = load(name + '-.pckl', combined_data)
> > >   File
> "/home/hasan99/.local/lib/python3.7/site-packages/ase/vibrations/vibrations.py",
> line 293, in load
> > >     f = pickleload(fl)
> > > EOFError: Ran out of input
> > >
> > > I have never seen this error before, and I have been running
> vibrational analysis (deltaG) for 1 month now and never got this error. My
> code runs fine and generates all the "vib." files until I get to
> "vib.summary(log='vib.txt')". I attached the python script as well as the
> submission file. Please let me know if you have any idea!
> > >
> > > Thanks,
> > >
> > > Hasan Al-Mahayni
> > > <input.xyz>_______________________________________________
> > > ase-users mailing list
> > > ase-users at listserv.fysik.dtu.dk
> > > https://listserv.fysik.dtu.dk/mailman/listinfo/ase-users
> >
>
> --
Hasan Al-Mahayni
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://listserv.fysik.dtu.dk/pipermail/ase-users/attachments/20220214/994f0f7f/attachment.htm>