[gpaw-users] installation problems on Mac OS X 10.6

Misha Monder misha_monder at yahoo.com
Wed Mar 24 18:50:56 CET 2010


Thank you Karsten.

I will try again after installing macports.

Cheers,
Misha




----- Original Message ----
From: Karsten W. Jacobsen <kwj at fysik.dtu.dk>
To: Misha Monder <misha_monder at yahoo.com>
Cc: GPAW Users List <gpaw-users at listserv.fysik.dtu.dk>; Kunal Karan <karan at chee.queensu.ca>
Sent: Wed, March 24, 2010 4:37:43 AM
Subject: Re: [gpaw-users] installation problems on Mac OS X 10.6


Dear Misha.

I do not know about fink, but on my macbook pro GPAW compiles without problems using macports. I also use snow leopard as you do.
For your information I list the ports which I have installed using macports below.

Best regards,
Karsten.

installed ports
-----------------------------------------------------------------------
apr                            @1.3.12         devel/apr
apr                            @1.3.12         devel/apr
apr                            @1.3.12         devel/apr
apr-util                       @1.3.9          devel/apr-util
apr-util                       @1.3.9          devel/apr-util
atk                            @1.26.0         devel/atk
atlas                          @3.8.3          math/atlas
autoconf                       @2.65           devel/autoconf
autoconf                       @2.65           devel/autoconf
autoconf                       @2.65           devel/autoconf
automake                       @1.11.1         devel/automake
automake                       @1.11.1         devel/automake
bzip2                          @1.0.5          archivers/bzip2
bzip2                          @1.0.5          archivers/bzip2
cairo                          @1.8.10         graphics/cairo
cairo                          @1.8.10         graphics/cairo
cmake                          @2.8.0          devel/cmake
cmake                          @2.8.0          devel/cmake
cmake                          @2.8.0          devel/cmake
cyrus-sasl2                    @2.1.23         security/cyrus-sasl2
cyrus-sasl2                    @2.1.23         security/cyrus-sasl2
db46                           @4.6.21         databases/db46
db46                           @4.6.21         databases/db46
dbus                           @1.2.16         devel/dbus
dbus                           @1.2.16         devel/dbus
dbus-glib                      @0.80           devel/dbus-glib
desktop-file-utils             @0.15           gnome/desktop-file-utils
docbook-xml                    @5.0            textproc/docbook-xml
docbook-xml-4.1.2              @4.1.2          textproc/docbook-xml-4.1.2
docbook-xml-4.2                @4.2            textproc/docbook-xml-4.2
docbook-xml-4.3                @4.3            textproc/docbook-xml-4.3
docbook-xml-4.4                @4.4            textproc/docbook-xml-4.4
docbook-xml-4.5                @4.5            textproc/docbook-xml-4.5
docbook-xml-5.0                @5.0            textproc/docbook-xml-5.0
docbook-xsl                    @1.75.2         textproc/docbook-xsl
expat                          @2.0.1          textproc/expat
fftw-3                         @3.2.2          math/fftw-3
fontconfig                     @2.8.0          graphics/fontconfig
fontconfig                     @2.8.0          graphics/fontconfig
fontconfig                     @2.8.0          graphics/fontconfig
fontconfig                     @2.8.0          graphics/fontconfig
freetype                       @2.3.12         print/freetype
freetype                       @2.3.12         print/freetype
freetype                       @2.3.12         print/freetype
gawk                           @3.1.7          lang/gawk
gcc43                          @4.3.4          lang/gcc43
gdbm                           @1.8.3          databases/gdbm
gdbm                           @1.8.3          databases/gdbm
geos                           @3.2.0          science/geos
geos                           @3.2.0          science/geos
geos                           @3.2.0          science/geos
getopt                         @1.1.4          sysutils/getopt
gettext                        @0.17           devel/gettext
ghostscript                    @8.71           print/ghostscript
ghostscript                    @8.71           print/ghostscript
glib2                          @2.22.4         devel/glib2
glib2                          @2.22.4         devel/glib2
glib2                          @2.22.4         devel/glib2
glib2                          @2.22.4         devel/glib2
glut                           @3.7            graphics/glut
gmp                            @5.0.1          devel/gmp
gmp                            @5.0.1          devel/gmp
gnome-common                   @2.26.0         gnome/gnome-common
gnome-doc-utils                @0.18.1         gnome/gnome-doc-utils
gnome-doc-utils                @0.18.1         gnome/gnome-doc-utils
gperf                          @3.0.4          devel/gperf
groff                          @1.20.1         sysutils/groff
gsed                           @4.2.1          textproc/gsed
gtk-doc                        @1.13           gnome/gtk-doc
gtk-doc                        @1.13           gnome/gtk-doc
gtk2                           @2.18.7         x11/gtk2
gtk2                           @2.18.7         x11/gtk2
gtk2                           @2.18.7         x11/gtk2
gzip                           @1.4            archivers/gzip
gzip                           @1.4            archivers/gzip
help2man                       @1.37.1         textproc/help2man
help2man                       @1.37.1         textproc/help2man
intltool                       @0.40.6         textproc/intltool
iso-codes                      @3.14           devel/iso-codes
iso-codes                      @3.14           devel/iso-codes
iso-codes                      @3.14           devel/iso-codes
iso-codes                      @3.14           devel/iso-codes
jasper                         @1.900.1        graphics/jasper
jasper                         @1.900.1        graphics/jasper
jasper                         @1.900.1        graphics/jasper
jmol                           @11.6.17        science/jmol
jpeg                           @7              graphics/jpeg
jpeg                           @7              graphics/jpeg
libart_lgpl                    @2.3.20         graphics/libart_lgpl
libcroco                       @0.6.2          gnome/libcroco
libglade2                      @2.6.4          gnome/libglade2
libglade2                      @2.6.4          gnome/libglade2
libiconv                       @1.13.1         textproc/libiconv
libiconv                       @1.13.1         textproc/libiconv
libidl                         @0.8.13         devel/libidl
libidn                         @1.16           mail/libidn
libidn                         @1.16           mail/libidn
libogg                         @1.1.4          multimedia/libogg
libpixman                      @0.16.6         graphics/libpixman
libpixman                      @0.16.6         graphics/libpixman
libpixman                      @0.16.6         graphics/libpixman
libpng                         @1.2.42         graphics/libpng
libpng                         @1.2.42         graphics/libpng
libpng                         @1.2.42         graphics/libpng
libsdl                         @1.2.14         devel/libsdl
libsdl                         @1.2.14         devel/libsdl
libsvg                         @0.1.4          graphics/libsvg
libsvg                         @0.1.4          graphics/libsvg
libsvg-cairo                   @0.1.6          graphics/libsvg-cairo
libsvg-cairo                   @0.1.6          graphics/libsvg-cairo
libtool                        @2.2.6b         devel/libtool
libtool                        @2.2.6b         devel/libtool
libtool                        @2.2.6b         devel/libtool
libvorbis                      @1.2.3          audio/libvorbis
libxml2                        @2.7.6          textproc/libxml2
libxml2                        @2.7.6          textproc/libxml2
libxml2                        @2.7.6          textproc/libxml2
libxslt                        @1.1.26         textproc/libxslt
libxslt                        @1.1.26         textproc/libxslt
libxslt                        @1.1.26         textproc/libxslt
lzmautils                      @4.32.7         archivers/lzmautils
m4                             @1.4.13         devel/m4
makedepend                     @1.0.2          x11/makedepend
makedepend                     @1.0.2          x11/makedepend
mesa                           @7.6.1          x11/mesa
mesa                           @7.6.1          x11/mesa
mesa                           @7.6.1          x11/mesa
metis                          @4.0.1          math/metis
mpfr                           @2.4.2-p1       devel/mpfr
mpfr                           @2.4.2-p1       devel/mpfr
ncurses                        @5.7            devel/ncurses
ncursesw                       @5.7            devel/ncursesw
neon                           @0.29.3         www/neon
neon                           @0.29.3         www/neon
netcdf                         @4.1            science/netcdf
netcdf                         @4.1            science/netcdf
netcdf                         @4.1            science/netcdf
netcdf                         @4.1            science/netcdf
openbabel                      @2.2.3          science/openbabel
openssl                        @0.9.8m         devel/openssl
openssl                        @0.9.8m         devel/openssl
openssl                        @0.9.8m         devel/openssl
orbit2                         @2.14.17        devel/orbit2
p5-getopt-long                 @2.38           perl/p5-getopt-long
p5-locale-gettext              @1.05           perl/p5-locale-gettext
p5-locale-gettext              @1.05           perl/p5-locale-gettext
p5-pathtools                   @3.31           perl/p5-pathtools
p5-pathtools                   @3.31           perl/p5-pathtools
p5-pathtools                   @3.31           perl/p5-pathtools
p5-scalar-list-utils           @1.22           perl/p5-scalar-list-utils
p5-scalar-list-utils           @1.22           perl/p5-scalar-list-utils
p5-xml-parser                  @2.36           perl/p5-xml-parser
pango                          @1.24.5         x11/pango
perl5                          @5.8.9          lang/perl5
perl5.8                        @5.8.9          lang/perl5.8
pkgconfig                      @0.23           devel/pkgconfig
popt                           @1.15           devel/popt
py25-altgraph                  @0.6.7          python/py25-altgraph
py25-bdist_mpkg                @0.4.4          python/py25-bdist_mpkg
py25-cairo                     @1.8.2          python/py25-cairo
py25-configobj                 @4.5.2          python/py25-configobj
py25-dap                       @2.2.6.7        python/py25-dap
py25-dateutil                  @1.4.1          python/py25-dateutil
py25-enthoughtbase             @3.0.2          python/py25-enthoughtbase
py25-envisagecore              @3.1.0          python/py25-envisagecore
py25-gobject                   @2.18.0         python/py25-gobject
py25-gtk                       @2.16.0         python/py25-gtk
py25-gtk                       @2.16.0         python/py25-gtk
py25-httplib2                  @2-0.6.0        python/py25-httplib2
py25-httplib2                  @2-0.6.0        python/py25-httplib2
py25-ipython                   @0.10           python/py25-ipython
py25-macholib                  @1.2.1          python/py25-macholib
py25-macholib                  @1.2.1          python/py25-macholib
py25-macholib                  @1.2.1          python/py25-macholib
py25-matplotlib                @0.99.1.2       python/py25-matplotlib
py25-matplotlib                @0.99.1.2       python/py25-matplotlib
py25-matplotlib                @0.99.1.2       python/py25-matplotlib
py25-matplotlib                @0.99.1.2       python/py25-matplotlib
py25-matplotlib                @0.99.1.2       python/py25-matplotlib
py25-matplotlib-basemap        @0.99.4         python/py25-matplotlib-basemap
py25-modulegraph-devel         @0.7.3          python/py25-modulegraph-devel
py25-modulegraph-devel         @0.7.3          python/py25-modulegraph-devel
py25-nose                      @0.11.1         python/py25-nose
py25-nose                      @0.11.1         python/py25-nose
py25-numeric                   @24.2           python/py25-numeric
py25-numpy                     @1.4.0          python/py25-numpy
py25-numpy                     @1.4.0          python/py25-numpy
py25-numpy                     @1.4.0          python/py25-numpy
py25-py2app-devel              @0.4.4          python/py25-py2app-devel
py25-py2app-devel              @0.4.4          python/py25-py2app-devel
py25-py2app-devel              @0.4.4          python/py25-py2app-devel
py25-pyobjc                    @2.2            python/py25-pyobjc
py25-pyobjc-cocoa              @2.2            python/py25-pyobjc-cocoa
py25-pyobjc2                   @2.0            python/py25-pyobjc2
py25-pyobjc2                   @2.0            python/py25-pyobjc2
py25-pyobjc2-cocoa             @2.0            python/py25-pyobjc2-cocoa
py25-pyobjc2-cocoa             @2.0            python/py25-pyobjc2-cocoa
py25-scientific                @2.8            python/py25-scientific
py25-scientific                @2.8            python/py25-scientific
py25-scipy                     @0.7.1          python/py25-scipy
py25-scipy                     @0.7.1          python/py25-scipy
py25-setuptools                @0.6c11         python/py25-setuptools
py25-setuptools                @0.6c11         python/py25-setuptools
py25-traits                    @3.1.0          python/py25-traits
py25-tz                        @2010b          python/py25-tz
py25-tz                        @2010b          python/py25-tz
py25-tz                        @2010b          python/py25-tz
py25-tz                        @2010b          python/py25-tz
py26-libxml2                   @2.6.21         python/py26-libxml2
python25                       @2.5.5          lang/python25
python25                       @2.5.5          lang/python25
python25                       @2.5.5          lang/python25
python25                       @2.5.5          lang/python25
python25                       @2.5.5          lang/python25
python26                       @2.6.4          lang/python26
python26                       @2.6.4          lang/python26
python26                       @2.6.4          lang/python26
python_select                  @0.3            sysutils/python_select
python_select                  @0.3            sysutils/python_select
python_select                  @0.3            sysutils/python_select
rarian                         @0.8.1          textproc/rarian
readline                       @6.1.000        devel/readline
readline                       @6.1.000        devel/readline
readline                       @6.1.000        devel/readline
serf                           @0.3.0          www/serf
shared-mime-info               @0.71           devel/shared-mime-info
shared-mime-info               @0.71           devel/shared-mime-info
shared-mime-info               @0.71           devel/shared-mime-info
smpeg                          @0.4.4          multimedia/smpeg
sqlite3                        @3.6.22         databases/sqlite3
sqlite3                        @3.6.22         databases/sqlite3
sqlite3                        @3.6.22         databases/sqlite3
sqlite3                        @3.6.22         databases/sqlite3
sqlite3                        @3.6.22         databases/sqlite3
subversion                     @1.6.9          devel/subversion
subversion                     @1.6.9          devel/subversion
SuiteSparse                    @3.4.0          math/SuiteSparse
svg2pdf                        @0.1.3          graphics/svg2pdf
tcl                            @8.5.8          lang/tcl
tcl                            @8.5.8          lang/tcl
tcl                            @8.5.8          lang/tcl
teTeX                          @3.0            print/teTeX
texi2html                      @1.82           textproc/texi2html
texinfo                        @4.13           textproc/texinfo
tiff                           @3.9.2          graphics/tiff
tiff                           @3.9.2          graphics/tiff
tiff                           @3.9.2          graphics/tiff
tiff                           @3.9.2          graphics/tiff
tk                             @8.5.8          x11/tk
tk                             @8.5.8          x11/tk
tk                             @8.5.8          x11/tk
wxgtk                          @2.8.4          x11/wxgtk
wxgtk                          @2.8.4          x11/wxgtk
Xft2                           @2.1.14         x11/Xft2
Xft2                           @2.1.14         x11/Xft2
xmlcatmgr                      @2.2            textproc/xmlcatmgr
xorg-bigreqsproto              @1.1.0          x11/xorg-bigreqsproto
xorg-compositeproto            @0.4.1          x11/xorg-compositeproto
xorg-compositeproto            @0.4.1          x11/xorg-compositeproto
xorg-damageproto               @1.2.0          x11/xorg-damageproto
xorg-dri2proto                 @2.3            x11/xorg-dri2proto
xorg-dri2proto                 @2.3            x11/xorg-dri2proto
xorg-fixesproto                @4.1.1          x11/xorg-fixesproto
xorg-fixesproto                @4.1.1          x11/xorg-fixesproto
xorg-glproto                   @1.4.11         x11/xorg-glproto
xorg-glproto                   @1.4.11         x11/xorg-glproto
xorg-inputproto                @2.0            x11/xorg-inputproto
xorg-inputproto                @2.0            x11/xorg-inputproto
xorg-kbproto                   @1.0.4          x11/xorg-kbproto
xorg-kbproto                   @1.0.4          x11/xorg-kbproto
xorg-libice                    @1.0.6          x11/xorg-libice
xorg-libsm                     @1.1.1          x11/xorg-libsm
xorg-libX11                    @1.3.3          x11/xorg-libX11
xorg-libX11                    @1.3.3          x11/xorg-libX11
xorg-libX11                    @1.3.3          x11/xorg-libX11
xorg-libXau                    @1.0.5          x11/xorg-libXau
xorg-libXaw                    @1.0.7          x11/xorg-libXaw
xorg-libXaw                    @1.0.7          x11/xorg-libXaw
xorg-libXcomposite             @0.4.1          x11/xorg-libXcomposite
xorg-libXcomposite             @0.4.1          x11/xorg-libXcomposite
xorg-libXcursor                @1.1.10         x11/xorg-libXcursor
xorg-libXdamage                @1.1.2          x11/xorg-libXdamage
xorg-libXdamage                @1.1.2          x11/xorg-libXdamage
xorg-libXdmcp                  @1.0.3          x11/xorg-libXdmcp
xorg-libXdmcp                  @1.0.3          x11/xorg-libXdmcp
xorg-libXext                   @1.1.1          x11/xorg-libXext
xorg-libXext                   @1.1.1          x11/xorg-libXext
xorg-libXfixes                 @4.0.4          x11/xorg-libXfixes
xorg-libXfixes                 @4.0.4          x11/xorg-libXfixes
xorg-libXi                     @1.3            x11/xorg-libXi
xorg-libXi                     @1.3            x11/xorg-libXi
xorg-libXinerama               @1.1            x11/xorg-libXinerama
xorg-libXinerama               @1.1            x11/xorg-libXinerama
xorg-libXmu                    @1.0.5          x11/xorg-libXmu
xorg-libXmu                    @1.0.5          x11/xorg-libXmu
xorg-libXp                     @1.0.0          x11/xorg-libXp
xorg-libXrandr                 @1.3.0          x11/xorg-libXrandr
xorg-libXScrnSaver             @1.2.0          x11/xorg-libXScrnSaver
xorg-libXt                     @1.0.7          x11/xorg-libXt
xorg-libXt                     @1.0.7          x11/xorg-libXt
xorg-libXt                     @1.0.7          x11/xorg-libXt
xorg-printproto                @1.0.4          x11/xorg-printproto
xorg-randrproto                @1.3.1          x11/xorg-randrproto
xorg-randrproto                @1.3.1          x11/xorg-randrproto
xorg-renderproto               @0.11           x11/xorg-renderproto
xorg-scrnsaverproto            @1.2.0          x11/xorg-scrnsaverproto
xorg-util-macros               @1.6.0          x11/xorg-util-macros
xorg-util-macros               @1.6.0          x11/xorg-util-macros
xorg-util-macros               @1.6.0          x11/xorg-util-macros
xorg-xcmiscproto               @1.2.0          x11/xorg-xcmiscproto
xorg-xextproto                 @7.1.1          x11/xorg-xextproto
xorg-xf86bigfontproto          @1.2.0          x11/xorg-xf86bigfontproto
xorg-xineramaproto             @1.2            x11/xorg-xineramaproto
xorg-xineramaproto             @1.2            x11/xorg-xineramaproto
xorg-xproto                    @7.0.16         x11/xorg-xproto
xorg-xproto                    @7.0.16         x11/xorg-xproto
xorg-xtrans                    @1.2.5          x11/xorg-xtrans
xorg-xtrans                    @1.2.5          x11/xorg-xtrans
xpm                            @3.5.8          x11/xpm
xpm                            @3.5.8          x11/xpm
xrender                        @0.9.5          x11/xrender
xrender                        @0.9.5          x11/xrender
zlib                           @1.2.3          archivers/zlib
zlib                           @1.2.3          archivers/zlib
zlib                           @1.2.3          archivers/zlib
-----------------------------------------------------------------------

Den 23/03/2010 kl. 23.37 skrev Misha Monder:

> Hello all,
> 
> I am trying to install GPAW on a Mac OS X 10.6 system and get the following error when using the install command:
> -----------------
> In file included from /sw/include/python2.5/Python.h:57,
>                 from c/_gpaw.c:6:
> /sw/include/python2.5/pyport.h:761:2: error: #error "LONG_BIT definition appears wrong for platform (bad gcc/glibc config?)."
> error: command 'gcc' failed with exit status 1
> -----------------
> 
> Any help in tracking where I should look is much appreciated.
> 
> This is the first time I am installing on Snow Leopard. I installed the Xcode tools followed by Fink 0.29.10. The python version: 2.5.4 while the ASE version is 3.3.1.1390. 
> 
> Cheers,
> Misha
> 
> 
> 
> 
>      __________________________________________________________________
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> _______________________________________________
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--
Karsten W. Jacobsen, Professor
CAMD, Dept. of Physics, Building 307, DTU, DK-2800 Kongens Lyngby, Denmark
Phone: +45 45 25 31 86  Fax: +45 45 93 23 99
E-mail: kwj at fysik.dtu.dk; WWW: http://www.fysik.dtu.dk/~kwj


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