[gpaw-users] compilation help

Glen Jenness glenjenness at gmail.com
Sat Apr 20 21:39:16 CEST 2013


Hey GPAW users!

I recently tried compiling GPAW, but I keep getting this error:

/usr/lib64/python2.4/config/libpython2.4.a(posixmodule.o): In function
`posix_tmpnam':
(.text+0x725): warning: the use of `tmpnam_r' is dangerous, better use
`mkstemp'
/usr/lib64/python2.4/config/libpython2.4.a(posixmodule.o): In function
`posix_tempnam':
(.text+0x808): warning: the use of `tempnam' is dangerous, better use
`mkstemp'
/tmp/ipo_iccjqCeKV.o: warning: memset used with constant zero length
parameter; this could be due to transposed parameters
/tmp/ipo_iccjqCeKV.o: In function `overlap':
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:92: undefined reference to
`__builtin_object_size'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:92: undefined reference to
`__builtin_object_size'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:92: undefined reference to
`__builtin___memcpy_chk'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:92: undefined reference to
`__builtin_object_size'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:92: undefined reference to
`__builtin___memcpy_chk'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:138: undefined reference
to `__builtin_object_size'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:138: undefined reference
to `__builtin_object_size'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:138: undefined reference
to `__builtin___memcpy_chk'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:138: undefined reference
to `__builtin_object_size'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:138: undefined reference
to `__builtin___memcpy_chk'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:146: undefined reference
to `__builtin_object_size'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:146: undefined reference
to `__builtin_object_size'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:146: undefined reference
to `__builtin___memcpy_chk'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:146: undefined reference
to `__builtin_object_size'
/home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:146: undefined reference
to `__builtin___memcpy_chk'
/tmp/ipo_iccjqCeKV.o: In function `bmgs_cut':
/

It continues on (I'm including my full build.log file and customize.py),
but I can't figure out how to correct it.  I am using python2.4

Any help would be appreciated :)

Thanks!
Glen

-- 
Dr. Glen Jenness
Schmidt Group/Morgan Group
Department of Chemistry/Materials Science and Engineering (MSAE)
University of Wisconsin - Madison
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