[gpaw-users] Segfaults when testing gpaw-python

[Hildur Guðmundsdóttir]

On 03/22/2013 10:11 AM, Jens Jørgen Mortensen wrote:
> Den 21-03-2013 12:21, Hildur Guðmundsdóttir skrev:
>> Good morning
>>
>> I am trying to install GPAW on the NHPC cluster
>> (http://nhpc.hi.is/content/hardware) and when running the tests with
>> gpaw-python they stop on the fourth test, due to segmentation faults.
>> This happens for numpy_zdotc_graphite.py, eigh.py and blas.py and no
>> doubt others too. I do not get any output, the tests just stop
>> running.
>>
>> When doing for instance:
>> mpirun -np 2 gpaw-python gpaw/test/blas.py
>>
>> I get
>> --------------------------------------------------------------------------
>> mpirun noticed that process rank 1 with PID 11048 on node
>> gardar-1.local exited on signal 11 (Segmentation fault).
>> --------------------------------------------------------------------------
>>
>> I have compiled numpy and GPAW with gcc using the same mkl libraries
>> for blas and lapack ('mkl_blas95_lp64', 'mkl_lapack95_lp64'). I'm
>> using python2.7, numpy1.7.0, openmpi-1.4.4 and gpaw 0.9.0-8965. First
>> I installed with the system provided numpy and got the same problem.
>> Attached is my customize.py
>>
>> I saw this has happened to others before but couldn't find a solution
>> for the problem, I would appreciate any advice.
>
> Does all tests pass in serial? Also when you run them with "mpirun -np 
> 1 gpaw-python"?
>
> You may want to try the latest development version which should get 
> rid of warnings from numpy-1.7.

I am running the serial tests but so far only two have failed (aeatom 
and pw/interpol), no segfaults.
When I use "mpirun -np 1 gpaw-python" I get a segmentation fault on the 
before mentioned tests (numpy_zdotc_graphite.py, eigh.py, blas.py) and 
many others, whereas some work fine, like spinpol.py and fermisplit.py.


>
> Jens Jørgen
>
>> Thanks in advance,
>>
>> Hildur
>>
>>
>> _______________________________________________
>> gpaw-users mailing list
>> gpaw-users at listserv.fysik.dtu.dk
>> https://listserv.fysik.dtu.dk/mailman/listinfo/gpaw-users
>

-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://listserv.fysik.dtu.dk/pipermail/gpaw-users/attachments/20130322/06d3042e/attachment.html