[gpaw-users] gpaw new version installation

Jingjing SHAO jingjingshao0103 at gmail.com
Wed Aug 8 13:20:45 CEST 2018


Dear gpaw developers,

i have installed gpaw 1.3.0 successfully in February by using following
customize.py
--------------
extra_compile_args = ['-std=c99', '-O2','-fPIC','-march=ivybridge']
compiler = 'cc'
mpicompiler = 'cc'
mpilinker= 'cc'

extra_link_args=['-dynamic']
#extra_link_args=['-dynamic','-shared']
*#**(build_ext with shared, install without shared)*
#include paths for libxc
include_dirs += ['/home/b/becjings/GS_GPAW/xc/include']
library_dirs = ['/home/b/becjings/GS_GPAW/xc/lib']

# libvdwxc:
libvdwxc = True
path = '/home/b/becjings/GS_GPAW/vdW_xc'
extra_link_args += ['-Wl,-rpath=%s/lib' % path]
library_dirs += ['%s/lib' % path]
include_dirs += ['%s/include' % path]

libraries = ['z', 'xc', 'fftw3', 'vdwxc']

scalapack = True
hdf5 = False

define_macros += [('GPAW_NO_UNDERSCORE_CBLACS', '1')]
define_macros += [('GPAW_NO_UNDERSCORE_CSCALAPACK', '1')]
define_macros += [("GPAW_ASYNC",1)]
define_macros += [("GPAW_MPI2",1)]
define_macros += [("GPAW_PERFORMANCE_REPORT",1)]
define_macros += [('GPAW_MR3',1)]
------------------------------------------------------------
-----------------------------------

However with the newest version 1.4.0 it failed at the step *python
setup.py install --home=$comp* with error report:
-----------------------------------------------------------------------------------------------
build/temp.linux-x86_64-3.3/c/xc/libxc.o: In function `get_fxc_fd_lda':
/home/b/becjings/GS_GPAW/gpaw/c/xc/libxc.c:38: undefined reference to
`xc_lda_fxc_fd'
collect2: error: ld returned 1 exit status
Traceback (most recent call last):
  File "setup.py", line 260, in <module>
    'Topic :: Scientific/Engineering :: Physics'])
  File "/sw/tools/python/3.3.3/generic/lib/python3.3/distutils/core.py",
line 148, in setup
    dist.run_commands()
  File "/sw/tools/python/3.3.3/generic/lib/python3.3/distutils/dist.py",
line 929, in run_commands
    self.run_command(cmd)
  File "/sw/tools/python/3.3.3/generic/lib/python3.3/distutils/dist.py",
line 948, in run_command
    cmd_obj.run()
  File
"/sw/tools/python/3.3.3/generic/lib/python3.3/distutils/command/install.py",
line 569, in run
    self.run_command('build')
  File "/sw/tools/python/3.3.3/generic/lib/python3.3/distutils/cmd.py",
line 313, in run_command
    self.distribution.run_command(command)
  File "/sw/tools/python/3.3.3/generic/lib/python3.3/distutils/dist.py",
line 948, in run_command
    cmd_obj.run()
  File
"/sw/tools/python/3.3.3/generic/lib/python3.3/distutils/command/build.py",
line 126, in run
    self.run_command(cmd_name)
  File "/sw/tools/python/3.3.3/generic/lib/python3.3/distutils/cmd.py",
line 313, in run_command
    self.distribution.run_command(command)
  File "/sw/tools/python/3.3.3/generic/lib/python3.3/distutils/dist.py",
line 948, in run_command
    cmd_obj.run()
  File "setup.py", line 212, in run
    assert error == 0
----------------------------------------------------------------------------------------------

I have tried modifying the line "extra_link_args=['-dynamic']", but that
does not really help much. The bash file i have used are attached below.
I would really appreciate if someone could give me some hint to solve the
problem.

Thank you all and have a great day.

Best,
Jingjing
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