[gpaw-users] Test failure

Jay Wai jaywai412 at gmail.com
Fri Aug 9 20:27:48 CEST 2019


Hello all,

I’ve just installed gpaw-19.8.1 with scalapack and fftw into a CentOS
machine.
There were no error or warning messages during the installation, but I have
difficulties in figuring out what causes the following problems in
after-installation steps:

1. ‘gpaw test’ run stops in the lcao/lcao_projections.py part showing a
weird message ‘killed’ as follows:
pw/fulldiagk.py                               3.026  OK
ext_potential/external.py                     2.956  OK
ext_potential/external_pw.py                  4.194  OK
lcao/atomic_corrections.py                    0.000  SKIPPED
vdw/libvdwxc_h2.py                            0.000  SKIPPED
generic/mixer.py                              2.478  OK
lcao/lcao_projections.py                 Killed

Is there any case in which gpaw internally kill the test process? Or should
I ask the system manager?

2. ‘gpaw -P 4 test’ stops right away showing following error messages
gpaw-python: symbol lookup error:
/apps/compiler/gcc/7.2.0/lib/libmca_common_verbs.so.7: undefined symbol:
ompi_common_verbs_usnic_register_fake_drivers’
Primary job  O-direction, the job has been aborted.
mpiexec detected that one or more processes exited with non-zero status,
thus causing
the job to be terminated. The first process to do so was:
  Process name: [[13827,1],0]
  Exit code:    127

Openmpi 3.x are installed in the system. Does that message something to do
with the compile setting of openmpi?

I have struggled with this problem for a few days.
It would be grateful if someone could help me on this.
-Jay
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