[gpaw-users] compilation help

[Marcin Dulak]

On 04/22/2013 04:52 PM, Glen Jenness wrote:
> Marcin,
> Sadly no.  Still getting the same error.
but the problems with "external declaration in primary source file" etc, 
disappeared?
How the complete build log looks like now, starting from python setup.py 
clean?

Marcin
>
> Glen
>
>
> On Mon, Apr 22, 2013 at 9:43 AM, Marcin Dulak 
> <Marcin.Dulak at fysik.dtu.dk <mailto:Marcin.Dulak at fysik.dtu.dk>> wrote:
>
>     Hi,
>
>     first, in the customize.py, try to use:
>
>     include_dirs +=
>
>     You are missing some includes.
>     Does that help?
>
>     Marcin
>
>
>     On 04/20/2013 09:39 PM, Glen Jenness wrote:
>>     Hey GPAW users!
>>
>>     I recently tried compiling GPAW, but I keep getting this error:
>>
>>     /usr/lib64/python2.4/config/libpython2.4.a(posixmodule.o): In
>>     function `posix_tmpnam':
>>     (.text+0x725): warning: the use of `tmpnam_r' is dangerous,
>>     better use `mkstemp'
>>     /usr/lib64/python2.4/config/libpython2.4.a(posixmodule.o): In
>>     function `posix_tempnam':
>>     (.text+0x808): warning: the use of `tempnam' is dangerous, better
>>     use `mkstemp'
>>     /tmp/ipo_iccjqCeKV.o: warning: memset used with constant zero
>>     length parameter; this could be due to transposed parameters
>>     /tmp/ipo_iccjqCeKV.o: In function `overlap':
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:92: undefined
>>     reference to `__builtin_object_size'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:92: undefined
>>     reference to `__builtin_object_size'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:92: undefined
>>     reference to `__builtin___memcpy_chk'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:92: undefined
>>     reference to `__builtin_object_size'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:92: undefined
>>     reference to `__builtin___memcpy_chk'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:138: undefined
>>     reference to `__builtin_object_size'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:138: undefined
>>     reference to `__builtin_object_size'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:138: undefined
>>     reference to `__builtin___memcpy_chk'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:138: undefined
>>     reference to `__builtin_object_size'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:138: undefined
>>     reference to `__builtin___memcpy_chk'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:146: undefined
>>     reference to `__builtin_object_size'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:146: undefined
>>     reference to `__builtin_object_size'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:146: undefined
>>     reference to `__builtin___memcpy_chk'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:146: undefined
>>     reference to `__builtin_object_size'
>>     /home/gjenness/programs/gpaw-0.9.0.8965/c/lcao.c:146: undefined
>>     reference to `__builtin___memcpy_chk'
>>     /tmp/ipo_iccjqCeKV.o: In function `bmgs_cut':
>>     /
>>
>>     It continues on (I'm including my full build.log file and
>>     customize.py), but I can't figure out how to correct it.  I am
>>     using python2.4
>>
>>     Any help would be appreciated :)
>>
>>     Thanks!
>>     Glen
>>
>>     -- 
>>     Dr. Glen Jenness
>>     Schmidt Group/Morgan Group
>>     Department of Chemistry/Materials Science and Engineering (MSAE)
>>     University of Wisconsin - Madison
>>
>>
>>     _______________________________________________
>>     gpaw-users mailing list
>>     gpaw-users at listserv.fysik.dtu.dk  <mailto:gpaw-users at listserv.fysik.dtu.dk>
>>     https://listserv.fysik.dtu.dk/mailman/listinfo/gpaw-users
>
>
>     -- 
>     ***********************************
>       
>     Marcin Dulak
>     Technical University of Denmark
>     Department of Physics
>     Building 307, Room 229
>     DK-2800 Kongens Lyngby
>     Denmark
>     Tel.:(+45) 4525 3157  <tel:%28%2B45%29%204525%203157>
>     Fax.:(+45) 4593 2399  <tel:%28%2B45%29%204593%202399>
>     email:Marcin.Dulak at fysik.dtu.dk  <mailto:Marcin.Dulak at fysik.dtu.dk>
>
>     ***********************************
>
>
>
>
> -- 
> Dr. Glen Jenness
> Schmidt Group/Morgan Group
> Department of Chemistry/Materials Science and Engineering (MSAE)
> University of Wisconsin - Madison


-- 
***********************************
  
Marcin Dulak
Technical University of Denmark
Department of Physics
Building 307, Room 229
DK-2800 Kongens Lyngby
Denmark
Tel.: (+45) 4525 3157
Fax.: (+45) 4593 2399
email: Marcin.Dulak at fysik.dtu.dk

***********************************

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